STdiff_volcano: Generates volcano plots from STdiff results

Generates volcano plots of differential expression results from STdiff

STdiff_volcano(
  x = NULL,
  samples = NULL,
  clusters = NULL,
  pval_thr = 0.05,
  color_pal = NULL
)

Arguments

x

the output of STdiff

samples

samples to create plots

clusters

names of the clusters to generate comparisons

pval_thr

the p-value threshold to color genes with differential expression

color_pal

the palette to color genes by significance

Value

a list of ggplot objects

Details

The function generated volcano plots (p-value vs. log-fold change) for genes tested with STdiff. Colors can be customized to show significance from spatial and non-spatial models