Reference

NN_G()

Univariate Nearest Neighbor G(r)

bi_NN_G()

Bivariate Nearest Neighbor G(r)

bi_pair_correlation()

Bivariate Pair Correlation Function

bi_ripleys_k()

Bivariate Ripley's K

bi_ripleys_k_WSI()

Bivariate Ripley's K for Whole Slide Images

compute_metrics()

Calculate Count Based Measures and NN Measures of Spatial Clustering for IF data

create_mif()

Create Multiplex Immunoflourescent object

dixons_s()

Dixon's S Segregation Statistic

example_clinical

Clinical variables of 229 patients

example_spatial

Example list of 5 spatial TMA data

example_summary

Marker summaries of 229 samples

interaction_variable()

Bivariate Interaction Variable

marker_freq_diff()

Marker Frequency Difference

merge_mifs()

Merge several MIF objects together

pair_correlation()

Univariate Pair Correlation Function

plot_immunoflo()

Generate plot of TMA point process

ripleys_k()

Calculate Ripley's K

spatial_exp_to_mif()

Create Multiplex Immunoflourescent object from a SpatialExperiment object

subset_mif()

Subset mif object on cellular level